Date: Tue, 12 Dec 2000 12:04:45 +0100 (CET)
From: Filip Lankas
Subject: Re: DNA flexibility


There is an article in J.Mol.Biol. dealing with calculating elastic
properties of DNA from MD trajectories:

Lankas F, Sponer J, Hobza P, Langowski J: Sequence-dependent Elastic
Properties of DNA. J. Mol. Biol. (2000) 299, 695-709

Good luck

Filip

On Tue, 12 Dec 2000, Jithesh P.V wrote:

>
> Hi,
>
> We are doing MD studies of DNA with water and ions using AMBER to study
> the flexibility. Could anyone suggest the best method of analysis of MD
> trajectories to represent the flexibility of duplex DNA.
>
> Thanks
> Jithesh