Author: Dave Case, found by Junmei Wang Date: 04/09/03 Programs: antechamber Description: the program fails to assign correct atom types for nitriles (and some similar functional groups) when LAPACK is set. Fix: apply the following patch to amber7/dat/antehcamber/ATOMTYPE_GFF.DEF ------------------------------------------------------------------------------- *** ATOMTYPE_GFF.DEF 2002/02/20 17:56:25 1.3 --- ATOMTYPE_GFF.DEF 2003/04/09 22:50:51 *************** *** 82,87 **** --- 82,88 ---- ATD nd - * 7 2 * * * * N2 P2 & ATD nd - * 7 2 * * * * P2 P2 & ATD n2 - * 7 2 & + ATD n1 - * 7 1 & //1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 ATD o - * 8 1 & ATD oh - * 8 2 * * 1 & ------------------------------------------------------------------------------- Temporary workarounds: none