AMBER Page

Amber12 Bug Fixes

12.0	March, 2012

Note: The individual bug fixes are described below in case you want to see what they do, or you don't want to use update_amber for some reason. Most users are encouraged to use the update_amber script (which is in $AMBERHOME, and is automatically run during the configure step) to handle patching tasks. This script automatically downloads and applies patches on this site individually and keeps track of every patch that has been applied, making patching and trouble-shooting easier.

Instructions for using update_amber can be found in the AmberTools 13 manual in Chapter 1 Section 5. See Jason's wiki page for more detailed instructions, as well as a work-around in case you are behind a firewall that blocks update_amber from contacting ambermd.org.

If you wish to apply these updates, run the command

$AMBERHOME/update_amber --update

As a note, the Amber configure script automatically checks for and downloads updates.