Amber11 and AmberTools Users' Manuals

The manuals are here in Acrobat (PDF) format:

Amber 11 Users' Manual (Order a bound copy.)
AmberTools 1.5 Users' Manual (Order a bound copy.)

Amber11 Users' Manual Additions and Corrections

p. 1 The name Jian Liu (Berkeley) should be added to the list of contributors to the current code.

p. 96 In the example at the top of the page, replace sander with sander.MPI.

p. 115 In the example in Section 4.6.7, replace sander with sander.MPI.

AmberTools 1.5 Users' Manual Additions and Corrections

(No additions or corrections yet!)

AmberTools 1.4 Users' Manual Additions and Corrections

p. 31 The reference to SPCFBOX should be SPCFWBOX.

p. 126 In the third line after Section 6.7, change "make -f Makefile_at parallel" to "make parallel".

p. 148 The default value for cutres is 99 Angstrom, not 24.

p. 116 The clusterdihedral command is incorrectly listed as dihedralcluster.

p. 283 The newton() example should read as follows:
newton( x, 3*m.natoms, fret, mme, mme2, 0.00000001, 0.0, 6 );

p. 1	The name Jian Liu (Berkeley) should be added to the list of contributors to the current code.
p. 96	In the example at the top of the page, replace sander with sander.MPI.
p. 115	In the example in Section 4.6.7, replace sander with sander.MPI.

p. 31	The reference to SPCFBOX should be SPCFWBOX.
p. 126	In the third line after Section 6.7, change "make -f Makefile_at parallel" to "make parallel".
p. 148	The default value for cutres is 99 Angstrom, not 24.
p. 116	The clusterdihedral command is incorrectly listed as dihedralcluster.
p. 283	The newton() example should read as follows: `newton( x, 3*m.natoms, fret, mme, mme2, 0.00000001, 0.0, 6 );`