- CARNAL -
			  AMBER  4.1

		      COORDINATE  ANALYSIS


input stdin 
> # distance between centers of mass of 'central' biotin and waters
> FILES_IN
>   PARM   p1 stbtcap.top;
Reading parm file (stbtcap.top)
parm: opening stbtcap.top
stbtcap.top title:
                                                                                
>   STREAM s1 traj/md01.crd;
Using default parm (stbtcap.top) for STREAM s1
stream: opening traj/md01.crd
> FILES_OUT
>   TABLE  t1 md01.dist;
> DECLARE
>   GROUP  g1 (RES 479);
** Group g1: 31 atoms
>   GROUP  g2 (ATOM TYPE OW);
** Group g2: 277 atoms
>   DIST   d1 g1%cmass g2%cmass;
> OUTPUT
>   TABLE  t1 d1;
> END      
(EOF reached on traj/md01.crd)
STREAM s1: no more files/crds (iteration 150)
SUMMARY
--Distance d1: avg       8.769  dev     1.089  max   10.573  min    7.112