# NOTE # Your frames will be different depending on the part of # the trajectory you choose to analyze # Load the trajectory file frames 2500-7500 inclusive trajin ../05_Prod.nc 2500 7500 1 # Center the lipid bilayer tail residues at zero coordinates center ":PC | :OL" origin # Image all water molecules to the zero coordinates using the # center of mass of the molecules image origin center ":WAT" # Calculate the electron density using 0.25 Angstrom slices. # Write out to the file electron_density.dat density out electron_density.dat electron delta 0.25 "*"