From: "Guanglei Cui"
Subject: RE: saving a trajectory as individual pdb files
Date: Mon, 2 Apr 2001 18:23:51 -0400

use ptraj. say you want to save every other frame from a 10-frame
trajectory.

trajin <traj> 1 10 1
trajout output.pdb pdb
go

the result will be a list of pdb files with names like output.pdb.*.


-----Original Message-----
From: Jake Isaacs
Sent: Monday, April 02, 2001 5:43 PM
To: AMBER list
Subject: saving a trajectory as individual pdb files



What is the best way to covert a trajectory into a series of pdb files? If
more than one program is required, does anyone have a handy script I could
modify for my purposes?