3.1 Equilibration of Explicit Water Systems
This will be a tutorial on how to properly relax the water and ions around the solute.
3.2 Running MD with pmemd
This tutorial goes through how to run under production run conditions with PMEMD with the cuda version used on GPU machines.
3.3 Equilibration of Implicit Solvent System (GB)
"How's that for maxed out?"
Jul 22, 2022