Useful links:
3.1 Relaxation of Explicit Water Systems
This will be a tutorial on how to properly relax the water and ions around the solute.
3.2 Relaxation of Implicit Solvent System (GB)
3.3 Running MD with pmemd
This tutorial goes through how to run under production run conditions with PMEMD with the cuda version used on GPU machines.
"How's that for maxed out?"
Last modified: Sep 16, 2024
This will be a tutorial on how to properly relax the water and ions around the solute.
This tutorial goes through how to run under production run conditions with PMEMD with the cuda version used on GPU machines.